rs47275041 SNP Detail

Summary

• ID
  rs47275041
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136721927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAT GCCACCTACT CTTAGGGTGG
  K
  TCTTCCCACC TCAGTTAACT AATCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144517292	ENSMUSSNP3351978	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss321700214	CHEV_5_137168943	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47275041					SNP	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136721927 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	within coordinates
Myl10	myosin, light chain 10, regulatory	73 bp upstream
Rr120856	regulatory region 120856	1961 bp proximal
Rr127468	regulatory region 127468	927 bp distal
Rr127469	regulatory region 127469	within coordinates
Tssr49256	transcription start site region 49256	1544 bp downstream
Tssr49257	transcription start site region 49257	236 bp downstream
Tssr49258	transcription start site region 49258	103 bp downstream
Tssr49259	transcription start site region 49259	43 bp downstream
Tssr49260	transcription start site region 49260	11 bp upstream
Tssr49261	transcription start site region 49261	523 bp upstream
Tssr49262	transcription start site region 49262	541 bp upstream
Tssr49263	transcription start site region 49263	584 bp upstream
Tssr49264	transcription start site region 49264	594 bp upstream
Tssr49265	transcription start site region 49265	1048 bp upstream
Tssr49266	transcription start site region 49266	1070 bp upstream
Tssr49267	transcription start site region 49267	1140 bp upstream