rs47276710 SNP Detail

Summary

• ID
  rs47276710
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:75151658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATT AAGTTACCCA TGCGCAAGAG
  M
  TCTCAGTCCC AGGAGCCTAG AGGTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147488242	ENSMUSSNP248290	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325690720	CHEV_18_75178241	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47276710					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:75151658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10229	CpG island 10229	within coordinates
Dym	dymeclin	194 bp upstream
Rr405742	regulatory region 405742	within coordinates
Rr540715	regulatory region 540715	within coordinates
Rr540716	regulatory region 540716	220 bp proximal
Tssr151951	transcription start site region 151951	104 bp upstream
Tssr151952	transcription start site region 151952	122 bp upstream
Tssr151953	transcription start site region 151953	336 bp upstream