rs47276827 SNP Detail

Summary

• ID
  rs47276827
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34352328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTAAGGATC TACCTCAGTA CAATGGACAT ACAATAGCCA
  TCTCAGTAAT TTAAATTTTT CCTTTGCTCA CCTCTACACA TACAGATAAT ATAATCTCTA
  C
  CTACTGATCC ATTGCCCCTG ACATATATGA AAAGTGATTT ACATTTCATT TAAAGAGCCA
  GTAGGTGAAA AACAATATAA TACACCACTA ACTGCTTAG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146937793	ENSMUSSNP1296846	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47276827					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34352328 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	1649 bp upstream
Cpgi9813	CpG island 9813	1202 bp proximal
Rr370354	regulatory region 370354	1517 bp upstream
Tssr150444	transcription start site region 150444	1615 bp upstream
Tssr150445	transcription start site region 150445	1679 bp upstream
Tssr150446	transcription start site region 150446	1703 bp upstream
Tssr150447	transcription start site region 150447	1833 bp upstream