rs47277324 SNP Detail

Summary

• ID
  rs47277324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120123863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGAGGAG AAGGAAGGAG
  CATTTGCTGT GCAGTCAGGC AGCAGCAGCC CGAAGAGCCA GCACCCACCA CCACTAACCG
  AGAGGTCTGA CCTTGGTGGG GCAGAAGCCT CAGTCTTCTA CTCCATTCAA GCAGGATGTC
  TGCGCTGACC TCAGATTGCC TCTGGGCTCA GGGGAAACGA CCGAGCCAAG TGTGCAGCAC
  R
  CATAATGTGA TTCTGGCACA TCCATGCTTC ATTAACAACA TTCATCTCAC TGCACCCCAG
  TGTGCACACT GTTGCTGGGG AGATGGTGCA TTTGGTAGGG GACTTGTCAT GCAAGCATGA
  AAACCTGGGT TCTCAGCTGT AGCAGCCACA TTAAAAAAAA AAAAGCTGAA CATGGTGGTG
  TGTGTCTATA ATCCCACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60789095	NES16467266	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47277324					SNP	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60789095	NES16467266	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120123863 () rs orientation: forward

Symbol	Name	Function Class
Rr396237	regulatory region 396237	1107 bp upstream
Rr417161	regulatory region 417161	1015 bp proximal
Rr417162	regulatory region 417162	1216 bp proximal