rs47278988 SNP Detail

Summary

• ID
  rs47278988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:81539072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTCCCAT CAGAGATATT
  GGTTTATGAA GATGACAGAA AAATAAGGAA ATACTTAATA GTCTTCTAAA GAAAAAAAAA
  TCCAAGACTG TAAACGTTCA ATAAGTTAAA CAGGTCTTTA TTGAGTGTCA TAGTTCAAGA
  GGCAAATCTG GACACACTGG TATCAAACAG TGATCTTGAA ACAGGATCAC TGATGAATTG
  R
  TGATGAGTCC TAGTTAATGT GATTTATGTC TACTTGCTTT GCAAGTAGCT CTCAGGCATG
  CAACCTGTGA AACAGCTGAT GTTTACATAC AGGGATCCAA GGGATATAAG AATTAGAGCA
  GAAAGAGACT CACACAGAGC CATCAGGACA GAGGAGCCTA GGAGCAACCT GGGACAGGAT
  TCTTCGAGTT TCCATCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61656626	NES17609076	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47278988					SNP	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61656626	NES17609076	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:81539072 () rs orientation: forward

Symbol	Name	Function Class
Gm28370	predicted gene 28370	within coordinates
S2bpcox16	synaptojanin 2 binding protein Cox16 readthrough	within coordinates