rs47280396 SNP Detail

Summary

• ID
  rs47280396
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31466733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCAGAAC AAACCGTCTT
  GGATGGTATG TAATCAGAGC ATTCCTAAGC AGCCCTGCTC CTATCTGTTA TACCAATAGT
  AACTTCCTTT TATCTGGTAC AGGCTTAAGA AATATGAATA CAAAGTTTCA TCAGAATATC
  TGCAGTGGAA AGATGACGAG GGTCAGCCTT ACCTCTACCT TAGTCAAAGT TATAGATATT
  W
  TAACTTACTG GTTAACCCTT GAGTGAGTTA TGAGTGACTG ACAAAAACGA GAAGCCAGAA
  TAAGCACTGC AGCACCACAT GCAAGAAAGC ACTCAATCCC TCCCGCCCCT CTTTACAGAG
  AAAGACGGTA CAAAAGGTGG TTCCCCCTCC CAACCCTTAC TAAGAAGGGC AAAGGTCAGC
  TATAGACAAC TTGAACCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147445795	ENSMUSSNP5541593	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47280396					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31466733 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	1320 bp downstream
Tssr133931	transcription start site region 133931	1351 bp downstream
Tssr133932	transcription start site region 133932	1384 bp downstream