rs47286332 SNP Detail

Summary

• ID
  rs47286332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24851070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCAGGCAG ATTTCTGAGT TCGAGGCCAG CCTGGTCTAC
  AGAGTGAGTT CCAGGACAGC CAGGACGATT CAGAGAAACT CTGTCTTGAG AAAAACAAAA
  Y
  AAAACAAAAC AAAACAAAAC ACCCAAACAA CTGAGTGTGG ATGAAGAGCT AGATCAATTG
  ATAAAACGCT TTCCAGACAA GTCTGAGGAT CTGAGTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148098511	ENSMUSSNP4550529	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321496133	CHEV_5_24151890	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47286332					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24851070 () rs orientation: forward

Symbol	Name	Function Class
1700022A21Rik	RIKEN cDNA 1700022A21 gene	1612 bp upstream
Tssr45438	transcription start site region 45438	609 bp downstream
Tssr45439	transcription start site region 45439	602 bp downstream
Tssr45440	transcription start site region 45440	589 bp downstream
Tssr45441	transcription start site region 45441	572 bp downstream
Tssr45442	transcription start site region 45442	566 bp downstream