rs47287004 SNP Detail

Summary

• ID
  rs47287004
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106145953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGCCATCCTT GGCAATTTTT CAGCGTCCCT GTCTCAAAAT
  AAAGCAATTG GAGATATAAC TCGGTGGTGG AGGGGCTGCC TAGCATGAGT TAAGTCCTTA
  G
  CATGAGTTAA GTCCTTAGGT TCAGTACCAC AAGAGGGGGA AAATGACGCT CCCTTCCAAA
  ATTTGAGAGA GACACATACT ATGGAATATT TAATCTGAAT T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132766181	ENSMUSSNP6113483	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs47287004					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106145953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	108 bp proximal
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	within coordinates
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	1058 bp upstream
Rr403040	regulatory region 403040	832 bp upstream
Tssr105507	transcription start site region 105507	997 bp upstream
Tssr105508	transcription start site region 105508	1013 bp upstream
Tssr105509	transcription start site region 105509	1046 bp upstream
Tssr111306	transcription start site region 111306	653 bp downstream
Tssr111307	transcription start site region 111307	918 bp downstream