rs47288025 SNP Detail

Summary

• ID
  rs47288025
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119726568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGTTTCCT TCAAAGTGTT TGTATTGTCA CTTAGCACAA
  AATAAGTTTT TCTATTATCT CTTGAGAGTG AAAAGTTTGG GAATATGGAC TGCATTTTAT
  S
  TTTTCTACTT AATTATTTCG TAATTACTCC TTTTCACTTT AAACATTTAC TGGTAGGTTA
  GCAGCATGAA AGTAGTAAAT GGTAGAGAAA AAAACCTAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147345342	ENSMUSSNP5162044	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss320477920	CHEV_2_119721823	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47288025					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119726568 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930485G23Rik	RIKEN cDNA 4930485G23 gene			within coordinates
Cpgi12132	CpG island 12132			801 bp proximal
Cpgi12133	CpG island 12133			1997 bp proximal
Gm75581	predicted gene, 75581			within coordinates
Gm75585	predicted gene, 75585			within coordinates
Mga	MAX gene associated			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr563600	regulatory region 563600			448 bp proximal
Rr563601	regulatory region 563601			1060 bp proximal
Rr563602	regulatory region 563602			1152 bp proximal
Tssr19669	transcription start site region 19669			1125 bp upstream
Tssr19670	transcription start site region 19670			1460 bp upstream
Tssr25831	transcription start site region 25831			1033 bp downstream