rs47288301 SNP Detail

Summary

• ID
  rs47288301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:174573380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTTCTG TGTTTACATT
  ACACGTGCAG TCCCTCTTGT CCACATATTT TTCCTGTGTT ATTTGAGGGA TCATTTTATT
  GAATAGCCTT CTCTTTGAAG CTCAGTTTGC AGAAGAGATA AAGAGAACAT CACTGGTTTT
  ATTTGAGGCT TCCCCGTGAT TCTTCTCTTC TTCTTGCTCT ATGCATTTTT TATCTCTCTT
  Y
  TCTGTCCCTT TTGGACTTCC AAAGCTCCAC CCTATCTTTC TGTGTATTTT TTTTTTCATA
  TTCTGATTTT TCTTTGCCCA AACCATGCTG GCAGCTTCTA ATCCACCATC TTACTCAGAC
  ATCCTCAGGA AACTTGTTTC AAGAATCGAG GTTGAAAAGT TTAGTGATAG GAATTTTCCA
  TTTCAATATA CAAAAGAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss146294631	ENSMUSSNP797576	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320144173	CHEV_1_176675945	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs47288301					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174573380 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	within coordinates
Gm51689	predicted gene, 51689	447 bp downstream