rs47288316 SNP Detail

Summary

• ID
  rs47288316
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:6621564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGTGGT TGTCATTTGT
  CATCTAAACA GTTGTTGGTT GAATTGTCCA ACTGCCTATC AGCCTGGAAG AGTGAAGTAC
  CAAGTCAGTC ACCCAGGACT CTTGCACACT CACCTGACTT TCCTCTATAC CTTTCTTCTG
  TTCTAGTCCC TGAATCTTCT CCCTCCTTCT ACCATACTTT GCTCTTAAAG TTTGCCCTGC
  W
  CAATATGCTT GCTATTTATC AAACAGCAAA AAGAAAAAAA AAGCAAACAA ACAAAATTTA
  AACCCATATT TAGTATTATT GGTGGTATTC AAAGCAGCAT TCAAAGCATG AATAAGTAAA
  TAGACAGGTA GGTAGGTAGA TAGATAGATA GATAGATAGA TAGATAGATA GGTAGGTAGA
  TAGACAACAG AGGTGCTAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62614978	NES17310650	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47288316					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62614978	NES17310650	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:6621564 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fyb1	FYN binding protein 1			Intron
				Noncoding-Transcript-Variant
Rr498833	regulatory region 498833			509 bp proximal
Tssr130533	transcription start site region 130533			764 bp upstream
Tssr130534	transcription start site region 130534			796 bp upstream
Tssr133626	transcription start site region 133626			605 bp downstream