rs47288595 SNP Detail

Summary

• ID
  rs47288595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70729431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGACTGG CTCCCTTCTA
  CTCCGGAAAC AGGTGTCTTT CCTGCTACTG TGGCTGGGAC TCAGTGATAA GACCCAAGGG
  CCCCTTGGAT ATAGGAAGGC AGAGTGCAGG AAGAGGGCTC CAGGGATGGG CTTCCTGTCA
  GGGTAGGAGG GAAGTAAGAC CCAGAGCTCA TCCCTGAAGA ACAAAGCTCA TGTCCTCTGC
  Y
  ACAGGCCCTG GGTTGCTCAT TCCCACCTAT GGAAATGGAA AAATAACAGA AGCTGGGCGT
  GGTGGGCCCT GTCGCTCACT CCACAGGGAT GGTGGCGGCA GGAGGACCAG TTGACCTATG
  AAGTTTATGG CCAGCCTGGG CTACATGAGA CTCTGTCTCA AAATAGCTAC TATCTGGGGT
  AGTGGTGGCC TATGCCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60633392	NES16277780	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47288595					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60633392	NES16277780	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70729431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20447	CpG island 20447	1555 bp proximal
Gm38427	predicted gene, 38427	within coordinates
Rr177422	regulatory region 177422	31 bp distal
Rr186738	regulatory region 186738	1369 bp proximal
Rr190310	regulatory region 190310	1632 bp distal
Tssr2595	transcription start site region 2595	1292 bp upstream
Tssr77724	transcription start site region 77724	1320 bp upstream