rs47288659 SNP Detail

Summary

• ID
  rs47288659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48125348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCCAAGC TGATGTGGAA
  CTTGGATTCA TAGCTGAGTA CGACTTTGAA CTTCATACTT TGACCTGCCC AGCACTGAGA
  TAGCAGGTGT CTGTCACTAC AAGCTGCCCC CCAGCACACC TGCTTTGCAA GGTGATGGGG
  ATTGAAGCCA GACCCTCATG CATGCTAAGG CAAGCACCAG GTGAGCTACA GTGCCAGAAC
  Y
  AACCTAGAAA TTCTTAACAC CAAAATTCAG CTACTTCAAG GAGACATGAA TTCATCTTTC
  TATTCTAGTC TGTTTAACAA ACTGTTCTCT TTCATAGGAA ACATCCTGAG GAAAAGCTCC
  AAATACAGAA AGAAAGAAAA AAGAGCTCAT GGCTCATTTC CCTCCCTCCC TCCCTTCCTC
  CTTTTATCTC TTTTCTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60455089	NES16441049	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47288659					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60455089	NES16441049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48125348 () rs orientation: forward

Symbol	Name	Function Class
Tssr138650	transcription start site region 138650	1089 bp downstream
Tssr138651	transcription start site region 138651	1060 bp downstream