rs47289016 SNP Detail

Summary

• ID
  rs47289016
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40548302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTCTGTC ACACACATTG
  TACTGAGTTG CTGCCAGAGA CGGGCTGATA GCAGGGAGGC AGAAACTATG ACCTCACCAT
  GCCAGCTCCA GCCTGCATCT TCTGTGGGTT CAGGGCCGGT AACAATCAGC GCAGATGCGC
  TAACAGCTTT GACATCTGCT CAGGTCCTGG TCCTAGCAAT AATGGAATGT TTTCTTGATT
  W
  AAAAAAATGT ATTTCCTCAC ATTATAGCAC TATTTAAAAT CACAAAGACC TTAAATAGAA
  TCCTTGGCTA TTAGAAACTT AGCAGTGACA TAGCCGTAGT GGCTGAAGCA GCACATGCGT
  GTGCAGGTCC ACATACGTGA GCACACACAC ACACATACAC ACACCACAAA CCCCCATAAA
  TACACACCAC ACAATTTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273173	NES16893947	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	T	A	T	T	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47289016					SNP	A	T	T	A	T	A	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273173	NES16893947	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40548302 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Rr430241	regulatory region 430241	1819 bp proximal
Tssr93028	transcription start site region 93028	763 bp upstream