rs47289427 SNP Detail

Summary

• ID
  rs47289427
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT TGTGGACCCC TTACTTCTTC
  K
  TTGGCCCTTA GGCAAATTCC TCCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145564851	ENSMUSSNP4502786	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322353670	CHEV_7_109399869	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47289427					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	371 bp distal
Rhog	ras homolog family member G	1237 bp upstream
Rr652562	regulatory region 652562	1278 bp distal
Rr652563	regulatory region 652563	742 bp distal
Rr652564	regulatory region 652564	413 bp distal
Tssr2354	transcription start site region 2354	1079 bp downstream
Tssr68328	transcription start site region 68328	1662 bp downstream
Tssr68329	transcription start site region 68329	1641 bp downstream
Tssr68330	transcription start site region 68330	1100 bp downstream
Tssr73939	transcription start site region 73939	1981 bp upstream
Tssr73940	transcription start site region 73940	1934 bp upstream
Tssr73941	transcription start site region 73941	1881 bp upstream
Tssr73942	transcription start site region 73942	1796 bp upstream
Tssr73943	transcription start site region 73943	1269 bp upstream
Tssr73944	transcription start site region 73944	1232 bp upstream
Tssr73945	transcription start site region 73945	1217 bp upstream
Tssr73946	transcription start site region 73946	1021 bp upstream
Tssr73947	transcription start site region 73947	876 bp upstream
Tssr73948	transcription start site region 73948	840 bp upstream
Tssr73949	transcription start site region 73949	807 bp upstream
Tssr73950	transcription start site region 73950	760 bp upstream