rs47289580 SNP Detail

Summary

• ID
  rs47289580
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38219406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA AAATTCTCTT AGCCCTCCAT
  W
  AAAGGGGTCC ATGAGCCCCT CAGGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148892255	ENSMUSSNP3588526	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47289580					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38219406 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	within coordinates
Cpgi5461	CpG island 5461	1174 bp proximal
Riok1	RIO kinase 1	1565 bp upstream
Rr271618	regulatory region 271618	1806 bp distal
Rr281252	regulatory region 281252	594 bp proximal
Rr369679	regulatory region 369679	1916 bp upstream
Tssr119342	transcription start site region 119342	1805 bp upstream
Tssr122123	transcription start site region 122123	1460 bp downstream
Tssr122124	transcription start site region 122124	1495 bp downstream
Tssr122125	transcription start site region 122125	1653 bp downstream
Tssr122126	transcription start site region 122126	1735 bp downstream