rs47290300 SNP Detail

Summary

• ID
  rs47290300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:161803909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTA GACACAGGTG TGTCTGTAGC
  R
  GCATGAGGAC TCCCTGCAGA AAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145926278	ENSMUSSNP5369952	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47290300					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161803909 () rs orientation: forward

Symbol	Name	Function Class
4930558K02Rik	RIKEN cDNA 4930558K02 gene	Intron
Gm38304	predicted gene, 38304	within coordinates
Rr396470	regulatory region 396470	103 bp upstream
Rr421879	regulatory region 421879	within coordinates
Rr421880	regulatory region 421880	194 bp proximal
Rr421881	regulatory region 421881	260 bp proximal