rs47290597 SNP Detail

Summary

• ID
  rs47290597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59652243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTATTTT TCTTTCAAAT TTAGAGTAGT TTCTATTTCA
  AAAATTGAAA AAAAAGAGTC ATTTATCAAT AAATCTATCC AGTCTTAAAT CATGTACAAT
  Y
  GTGGTTTTTA AATTTCTGTC TTCTCTTTAA GTACAGCTTA TATTTTTAGC TGCTACAGAG
  TGTTTAATTT TTTTTAAGTC GGCATTAAAA TATAAATAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61014598	NES16116681	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C	T	C	T	T	C
ss144685518	ENSMUSSNP5569416	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47290597					SNP	C	T	C	C	C	C	C	C	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014598	NES16116681	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59652243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	1813 bp proximal
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	1169 bp upstream
Rr647544	regulatory region 647544	679 bp proximal
Rr647545	regulatory region 647545	1180 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr66968	transcription start site region 66968	1194 bp upstream
Tssr66969	transcription start site region 66969	1926 bp upstream
Tssr72702	transcription start site region 72702	488 bp downstream
Tssr72703	transcription start site region 72703	566 bp downstream
Tssr72704	transcription start site region 72704	643 bp downstream
Tssr72705	transcription start site region 72705	669 bp downstream
Tssr72706	transcription start site region 72706	1471 bp downstream