rs47290650 SNP Detail

Summary

• ID
  rs47290650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153424620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCCTGTCTCG AAAAACAAAC AAACAAAATC ATCAAAACAA
  CAAAACCCAG AGGATTCAGC AGAGCATGGC AACACACATC TTTGATCCCA ACATTAGATC
  Y
  GTGAGCAAGG CCAGCCTGGT CTACTTGTAG TTTCAGGACA GCCAGGGCTA CATCATAGAG
  ATACCTAGTC ACAGAAAAGA GAAGAGAAAA GAGGATTTCT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145744821	ENSMUSSNP2054462	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47290650					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153424620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	611 bp proximal
F630010C12Rik	RIKEN cDNA F630010C12 gene	within coordinates
Npl	N-acetylneuraminate pyruvate lyase	within coordinates
Rr420696	regulatory region 420696	898 bp distal
Rr420697	regulatory region 420697	568 bp proximal
Rr420698	regulatory region 420698	1161 bp proximal
Tssr14276	transcription start site region 14276	823 bp downstream
Tssr14277	transcription start site region 14277	860 bp downstream
Tssr14278	transcription start site region 14278	944 bp downstream
Tssr14279	transcription start site region 14279	964 bp downstream
Tssr14280	transcription start site region 14280	1171 bp downstream