rs47291022 SNP Detail

Summary

• ID
  rs47291022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85924671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTGTTG TTGTTTTTGT
  TGTTGTTGTT GTTGTTGTTC AAAGGAAAGT AATCGGAGTC CCTGAAGGGC TTCGGGGCCT
  CTCCGCCTGA GTACTGCGCT CCCCTGCGCC CTCCCTGGCG GTCTGCTCCA AGCTCCTTCG
  TTTGCAGCTT GCGGGGAGGC CCAGACCACC CGCTACCCAG CAATCTCTCT GTCTTCCAAT
  R
  TCCTAGAGCC CGGAAGAGGC GTTGCCCCCA GGACAAACCT TCCTGACCGT TTGGGTCGGC
  TGTTCCGGGT TGAGCATGGG TGAACTGGGT GTAGCTGTCC CAGGCCTTCT GGGACTCGCT
  TTCCTGGGCT TTCCCTGTAG CCCCAAACAA GGAGGAAGTG TGCTTCCCGC AAAGTCCTCT
  GACTGTATGA GACGTTATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62953690	NES17409311	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss325486768	CHEV_17_86016583	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47291022					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62953690	NES17409311	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85924671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9589	CpG island 9589	1784 bp distal
Cpgi9590	CpG island 9590	458 bp distal
Cpgi9591	CpG island 9591	1 bp distal
Cpgi9592	CpG island 9592	491 bp proximal
Gm54532	predicted gene, 54532	824 bp upstream
Gm54533	predicted gene, 54533	1982 bp upstream
Gm55784	predicted gene, 55784	1961 bp downstream
Gm55785	predicted gene, 55785	270 bp downstream
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr5219	transcription start site region 5219	1110 bp downstream
Tssr5220	transcription start site region 5220	1320 bp downstream
Tssr149712	transcription start site region 149712	1781 bp upstream
Tssr149713	transcription start site region 149713	1120 bp downstream
Tssr149714	transcription start site region 149714	1135 bp downstream
Tssr149715	transcription start site region 149715	1170 bp downstream
Tssr149716	transcription start site region 149716	1252 bp downstream
Tssr149717	transcription start site region 149717	1305 bp downstream
Tssr149718	transcription start site region 149718	1329 bp downstream
Tssr149719	transcription start site region 149719	1339 bp downstream