rs47291465 SNP Detail

Summary

• ID
  rs47291465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:82327121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTTCAT TTCCTTTAAA
  AATGCTGAAA ACTATTACCA TTTGATAGAC AAAAGAAAAT TCATATTTAA GATACAATAT
  TATTTTGAGA CATTTTACCT TCTTGTATAG TTGTTCAATT TAGTTGAATG AAAGAAGGAA
  ATTCACCATA GATGAGACAG TGCCAGGAAA GATGCTAGTA TTCAAGTAAT TGTAAATACA
  Y
  CCAAAAATCC CATAGATTCA ACATGCTACA TGAAATTATA TGTTTGCATG ACTTTACATT
  ATTATCCTAT GAAATTATTG AGTTGGTTTA TAGCACATAT TCCATAGATA TTAAGAATAA
  TAATAATAAA GAAAAACTAC AAGGAGATAT TAAGTTTCTT AGGCCAACCT ATGAACACTA
  TTCTCAAGTA CATTTCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52395357	NES15271193	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47291465					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52395357	NES15271193	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:82327121 () rs orientation: forward

Symbol	Name	Function Class
Gm1553	predicted gene 1553	within coordinates
Tssr98669	transcription start site region 98669	1253 bp downstream
Tssr98670	transcription start site region 98670	1325 bp downstream
Tssr98671	transcription start site region 98671	1355 bp downstream