rs47292869 SNP Detail

Summary

• ID
  rs47292869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121616494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGAGAA GGAGGGAGGA
  GGGAGGAGGT GGGGGAGAAC TGCAAAATGA TTCTTAGCTC ACAGGCTCTA TAAACACAGG
  AGGTGAGGCG GATTTGGCTG GACAGCAGTA ATTTGCTATT TCATTAGGGA CATGAAAGAA
  CTGGCTAGGA ACCTGCTGCC AGGAGCAACC ACTGACCTAG ATTTCTTTTG TTTTCCACCT
  Y
  GCTACATATT ACTTTTATGG ACTGCAGAGT ATTGAGAAGC ATATGTCCCT GTGCTTGTTA
  AAGTACTACC GAATTCAAGG AGTTACTAGG ATTAGACACT TGCGTCTGTA ACCGTTGAGC
  CTGAGCAGCA CATAGAAAGC CTTACAGATT GCAACAGTTG TCATTAATGC TTTGATGATT
  CCTTGCCCCT GGTTAGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135729819	ENSMUSSNP2355114	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47292869					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121616494 () rs orientation: forward

Symbol	Name	Function Class
D3Mit347	DNA Segment, Chr 3 Massachusetts Institute of Technology 347	220 bp proximal
Gm42776	predicted gene 42776	599 bp downstream
Rr584178	regulatory region 584178	823 bp distal
Tssr31460	transcription start site region 31460	1083 bp upstream