rs47293110 SNP Detail

Summary

• ID
  rs47293110
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54813381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGG GGCGCGAGAG GATGCTCTCC
  B
  GGCCCCGCAG CGCCTCCTCC TCCTT                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss139565730	ENSMUSSNP6805565	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss324638257	CHEV_14_55194761	CHEVERUD	SCREENING_POP	f	SNP			C		G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47293110					SNP	C	C	C	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54813381 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	within coordinates
Cpgi6463	CpG island 6463	within coordinates
Gm63340	predicted gene, 63340	1671 bp upstream
Rr389676	regulatory region 389676	1917 bp downstream
Rr389677	regulatory region 389677	within coordinates
Tssr128601	transcription start site region 128601	216 bp upstream
Tssr128602	transcription start site region 128602	1556 bp downstream
Tssr128603	transcription start site region 128603	1603 bp downstream
Tssr128604	transcription start site region 128604	1619 bp downstream
Tssr128605	transcription start site region 128605	1637 bp downstream
Tssr128606	transcription start site region 128606	1654 bp downstream