rs47297807 SNP Detail

Summary

• ID
  rs47297807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80037328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAATTTT TCATCTGTGT
  GGTGTGGGTA GTGAACCCCC TTCTGAGTGT AGACTACATT CCAGAGGAAT ACCTGGCACA
  TACTAGGCAC TTGTCTCTGT TCCTGACAGA GAACAAGAGA GCAGAAAATC CCGCAACCCC
  AGTGCCCCTG GAGCCCTGCC TTCCCCCCCA GCTCTGCAGA CCCTGCTGCC TTCTGGGCTC
  R
  GGGCACAGGC AGACAGGACT GTGCTGGCTA GTGCTGCGGT GCCTGTAGGC GGAGACCTGT
  TAGAGTTCCT TTCCTCATTA CTGTAACCAG ATCCCTGACA GAAGTACCTG ACTGGGGGAA
  AGGGGCTTTT TGTTTGTTTT GGTTTTTGGC TCATCCTTTA AAGCTGTGAC TCTCCATCAT
  GACAGGGGAG CGTGGTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569804	NES17023165	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47297807					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569804	NES17023165	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80037328 () rs orientation: forward

Symbol	Name	Function Class
Rr304352	regulatory region 304352	1128 bp distal
Rr308002	regulatory region 308002	within coordinates
Rr314587	regulatory region 314587	873 bp proximal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates