rs47299227 SNP Detail

Summary

• ID
  rs47299227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:41397761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTGCTT CTCCCTCTGA
  AGTGCTGGGA TTACACTACC CCAGGCTTAA ATAATTGTTT AATATTCGTG TGTATGTACA
  TGTATGTGAA CACACTTCCT GCCCCAGCAT GCAAATGGAG GTCAGAAGAC AACATTGGTT
  CTCTCCTTCC ACCTTGTGCG TCTGGGGGAT TGAACTCAGG TCGTCAATAT TAATTTCCTG
  R
  ACCATGCTTG AAATGTCTTA TACCAGTTTA TTAAGTTTGA CTATTTTGAA GAATTATTAA
  TTTTTAAAAC TATATCTAAC GCTTACTGTT GAAAATAGAT GTAGAGCAAA CTAATGAAAT
  GTCAATTCAT TGATTTCATA ATTTCCCCTC AGAAACCTGT GCGAGCTTCA ACAGCTGTGT
  TTCCTGTGTT AATGCCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52250139	NES15258914	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47299227					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52250139	NES15258914	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:41397761 () rs orientation: forward

Symbol	Name	Function Class
Cd164	CD164 antigen	within coordinates
Cpgi1473	CpG island 1473	1564 bp distal
Tssr93052	transcription start site region 93052	1932 bp downstream
Tssr93053	transcription start site region 93053	1906 bp downstream
Tssr93054	transcription start site region 93054	1838 bp downstream
Tssr93055	transcription start site region 93055	1804 bp downstream
Tssr93056	transcription start site region 93056	1776 bp downstream
Tssr93057	transcription start site region 93057	1765 bp downstream
Tssr93058	transcription start site region 93058	1231 bp downstream