rs47300262 SNP Detail

Summary

• ID
  rs47300262
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:115191474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATAGCCA GTGCTCTTAA
  CCACTGAGCC AACTCGTCAG GCCCCTCCCC CATCAATTCT TAAAGGAAGA AACCAAACCA
  ACCGACCAAC CAACCAACCA AACAAACAAA AACATACTGT GGTCCTAGGA ACTCTTTAGC
  ACCTGAAAAC CCCTCGGTGG TCACATGAAC CCAGTAGCTC CTCACTGCAC TACCAACCAT
  K
  GTGGTGTTCA GTGGGCATGC AACTTTTGTT TTTTGTTTTT TTTTTTTTCC CCCATTGGCT
  ATTTTAACCA CCTTAAAGTG GACTTCAGGA ATATCACCTA CAGCATGACC TTTTCGACCA
  AATCCAGCAA CGAGAACTTC ATCATTTTCC TCAATGAAGT TCAGGCAGCC ATCATTGGGC
  ACGAACACTG TGATCTTGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149120727	ENSMUSSNP6992025	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47300262					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115191474 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm13827	predicted gene 13827			54 bp downstream
Rr378497	regulatory region 378497			1924 bp downstream
Rr618105	regulatory region 618105			426 bp distal
Rr618106	regulatory region 618106			438 bp proximal
Rr618107	regulatory region 618107			1941 bp proximal
Sppl3	signal peptide peptidase 3			Intron
				Noncoding-Transcript-Variant
Tssr48203	transcription start site region 48203			46 bp upstream