rs47303620 SNP Detail

Summary

• ID
  rs47303620
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28685329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACGAAAC ACCTGTCAAA
  CGCCAAACTC AGAAACACCC ACTGATCCTC AACCGAGTGG TACTGGGTCT AAACACTTCC
  AAAAAGTTAA GGTTAATGTC AGTGGGGAAA GAAAAAAAAA AAAAAAAAAG TCCAGCAATC
  AAGTGCAGAA GGCAGCACGG ACTTAAGCGT GAGACTGGCC TGCACTGGAA GTCCCTGTCT
  S
  CTGCCCTCCC GTCTCTTGCC CCGGGAATAG AGGCTGTCAA CCACCCGTGG GCAGCGAGCG
  AGCGCACTCC GGGGTCCCCG CTCACCTTGG CTGCGGTGAT GTTGAGTTCC CGCAGCTGCG
  CCTTGAGATC GGAGTTCATC TCCAGCTCGA GCAGCGCCTG GGGAGACAGA GAACGTGGGC
  GCCATGCCGG GGGTCAGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137502204	ENSMUSSNP6845291	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47303620					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28685329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	within coordinates
Gm53713	predicted gene, 53713	739 bp upstream
Rps7	ribosomal protein S7	within coordinates
Rr265285	regulatory region 265285	within coordinates
Rr369505	regulatory region 369505	467 bp upstream
Tssr116014	transcription start site region 116014	90 bp upstream
Tssr116015	transcription start site region 116015	502 bp downstream
Tssr116016	transcription start site region 116016	513 bp downstream
Tssr116017	transcription start site region 116017	537 bp downstream
Tssr116018	transcription start site region 116018	561 bp downstream
Tssr116019	transcription start site region 116019	584 bp downstream