rs47304515 SNP Detail

Summary

• ID
  rs47304515
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53379649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTCTTA AAATTCCAAA
  GTGTTCATGG ACGGCAATTT ATTTGATTCT CAGGTCAGTT CTATGACATG TGCAGCAAAG
  GGCAGTTTTG TGGATAATCC AACAGAGACA TGGAATCTTT TAGGAAACAC CAGTGTCCTA
  TGCCTAGCTA TGATGGCAGT TTAGTTGTCA GACTCCAAGT TCAGATCTTA TTTTATGACA
  M
  AGTGGTGCTG TCTACCATCG TACTTTGAGA CACCGTGTGC TTTTGAATGT ATGCTATGTG
  CTCCAATCAT TCTTGATCTT TTCAAATAGA GAGTGTGATT CAGAACTGAA TATAGGAGGC
  AAGGGCAAAT GCTTCATGTG TGCAGTCCCC ATGTAGTGAA CCCTCAGTGG AGAAGGAAGT
  CAGATGGTGA AGGTACTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137751807	ENSMUSSNP3308224	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss324042724	CHEV_12_54433853	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47304515					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53379649 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267617	regulatory region 267617	1049 bp distal