rs47305233 SNP Detail

Summary

• ID
  rs47305233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109558663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGACTTG CGGAAAGCCC
  TCTTCAGGGA TTCCAAGGCC TCCTGCTCCT CTTCTCCCCA GTAGTAGGGC TCTGAACTCA
  GCAGTTGTCT CACTAGGGGT GCTGCGATGA CAGCGAAGTT CTCCACGAAG TGGCGATAGG
  GATAGACAAG GTCAATCACA CTTTGAAGAC ACCTCCTGCT GCCAGGGACA GGGCACCCCA
  Y
  GATGAGGTTC ATAAGGTTCT TGTTCAGTTT CACCCCTTTG GGGGATATGT TGAAGCCCAA
  GATTTCAGCG GTCTGGCGAT GGAACTGAGT TTTGTCCAGT GAACAGTAGA TGTTGTGATA
  CCGAAAGCGG ACCAGGACTT GGCGGACATG CTGGGAGTGT TCCTCCTGGC TCATTGAGTA
  GACCAGGACC TCTCTGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61717609	NES17648267	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47305233					SNP	C	C	C	C	C	C	C	C	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717609	NES17648267	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109558663 () rs orientation: forward

Symbol	Name	Function Class
6430411K18Rik	RIKEN cDNA 6430411K18 gen	within coordinates
Mir127	microRNA 127	617 bp upstream
Mir431	microRNA 431	1692 bp downstream
Mir433	microRNA 433	391 bp downstream
Mirc43	microRNA cluster 43, including Mir341 through Mir1188	within coordinates
Rtl1	retrotransposon Gaglike 1	within coordinates
Tssr115133	transcription start site region 115133	1703 bp downstream
Tssr115134	transcription start site region 115134	1311 bp downstream