rs47305926 SNP Detail

Summary

• ID
  rs47305926
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33036018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTATCTT ACTACAAAAA
  CTACCAACTA AACCACAGCA GGCAAAGGGC TCTATCACTA GTAGAGTGAG AATTGCTGGT
  CACAGACTCA AAAACTCAGT TCAACAGTCT GGGGTTTCTA ATCAATAAAA CTTTAATAAG
  TTCTTTTCAA AGTAACAAAT TTCAAAGGAA AAAGTTTTCA AGCAGTTGAA ATGTTTTTAA
  R
  TTTTTATTTC CTTGTAACTC TTACATAGTT AATTAAGAGT AGTTGTGTAA AAGCAGTAGA
  CAGAAAATAT AAAGTACTCT AAAACCTTCT GAAGTCATAG TGCTCTATTT ACTAGATACA
  AGTAAGTGTA CTTCCCAAAG CATGAAGCTC CAAAGTCGAG GCAAAGGAGA ATATTAAAGT
  TGTTAGTGTG TATACTAACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss60876112	NES15978850	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A	G	A
ss321780403	CHEV_6_33009083	CHEVERUD	SCREENING_POP	f	SNP							G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs47305926					SNP	G	G	G	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876112	NES15978850	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33036018 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	within coordinates
Cpgi17277	CpG island 17277	671 bp proximal
Rr146107	regulatory region 146107	within coordinates
Rr399607	regulatory region 399607	1151 bp upstream
Tssr60218	transcription start site region 60218	1089 bp downstream
Tssr60219	transcription start site region 60219	1173 bp downstream