rs47306624 SNP Detail

Summary

• ID
  rs47306624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:53522382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATATTTC CTGACAGTCT
  GAGAATCTAG TGCTTTTGCC TGGCTCACAC TTTGTTTATC CCTTTATTTC TGAAGGGGGG
  TATGAGACCT TCTACTCACA GTATCCTGAG TGCTGTGTGG ATGTGAAGCC CACCTCACAA
  GAGAAGATCG AAGGCGAGAG AAGCCTCCTC AGCCAGTGTG GAAAGCCCGT TCTCAGCGTC
  R
  CCTACAGACC AGCCTATGAC CAGGTATGTG CTTGCCAGCT GCTGCCTCTG TCCCTCCCGC
  AGCATCCCCA CTCAGGCTGG CTCTGTGCGA TAAGGGGGCT AACACTGCTC TTCAGAGTGC
  TGCTGTCGCT TGCCAACAGG GGTGCTCATC CAAGAGTAAG TGGGCATTCT TCCTGCACAT
  ACACAGCTAA CTAAAGTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63284349	NES17498602	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47306624					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63284349	NES17498602	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53522382 () rs orientation: forward

Symbol	Name	Function Class
Dusp5	dual specificity phosphatase 5	Coding-NonSynonymous
Rr549550	regulatory region 549550	788 bp distal
Rr549551	regulatory region 549551	1161 bp proximal
Tssr156987	transcription start site region 156987	130 bp downstream
Tssr156988	transcription start site region 156988	112 bp downstream
Tssr156989	transcription start site region 156989	39 bp downstream
Tssr156990	transcription start site region 156990	9 bp downstream