rs47307506 SNP Detail

Summary

• ID
  rs47307506
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70417089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGCTTCATT TTCCATGAGG ACTAGTAGGT GGTAGCAGTA
  TTTGTATCCC TGGAGCTGCA GGGAGTAGAC GGTGATGTGG TGGAGGAGGG AGGCAAGTGG
  S
  CTCCTTCTCA CTGTTTCCGC CATCCTGCAG GTCCTACATC GCCAATCGAG TGACTGACAA
  GCTGACCCCT ATCCACGATC ACATCTTCTG CTGCCGCTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132372312	ENSMUSSNP5190528	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
ss323735961	CHEV_11_70339765	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47307506					SNP	G	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70417089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	721 bp distal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Rr369269	regulatory region 369269	879 bp downstream
Rr450322	regulatory region 450322	867 bp distal
Tssr102728	transcription start site region 102728	869 bp downstream
Tssr102729	transcription start site region 102729	332 bp downstream
Tssr102730	transcription start site region 102730	288 bp downstream
Tssr102731	transcription start site region 102731	229 bp downstream