rs47308906 SNP Detail

Summary

• ID
  rs47308906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174315098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAATCAAG TCCCTCCTTC
  GTGAAGGCTC AGTGCGCCGG CGCAGAGCCG AAAAGTGAGG CGGCCGGCCG GCGCCGCACT
  ACGCATGCGC GGGCCTTGGC GGCGGGACTT TTTGGCTGGT TTGGCGGGTT GCTGATATGT
  GTCTAAAGTT CTCATTGGAT GTGGCTGAGC CTGGCGGCGT TTGCCAGAGT ACGGTTTTGT
  R
  GTGTGGTCTT AGAGAGTTAG TCCCACCTCT TCAATCTAAG CAGTGGGGTG GCGGGACAGG
  GGTGGTTTCA ATCAGCACCC GTGCCCTTGC CAGCCCAGGG TTGGTTACCC TTGGTGGAAC
  AGGCCACCCA GACAGGGCTG GACCAATTGC TCTACGGTCA TAGGTCATCT CCATCACCAT
  TTCTCAGTGA TGCCCACGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148343952	ENSMUSSNP4148459	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320627900	CHEV_2_174298806	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47308906					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174315098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	within coordinates
Prelid3b	PRELI domain containing 3B	364 bp upstream
Rr397557	regulatory region 397557	127 bp downstream
Rr572132	regulatory region 572132	1989 bp distal
Rr572133	regulatory region 572133	418 bp distal
Rr572134	regulatory region 572134	682 bp distal
Rr572135	regulatory region 572135	315 bp distal
Rr572136	regulatory region 572136	287 bp distal
Rr572137	regulatory region 572137	110 bp distal
Rr572138	regulatory region 572138	within coordinates
Tssr28035	transcription start site region 28035	369 bp upstream
Tssr28036	transcription start site region 28036	286 bp upstream