rs47309086 SNP Detail

Summary

• ID
  rs47309086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28777183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGACCTGC TAATAAAAAT
  GGAAAACAAC CCAGCATCTT AATTATTTAT CTTTTAAGTA AATATAAATT TTCTGGAAGT
  AGCTTCTTCC CTGGATGAGC GGACTGCAGA AGCATTACCT TGTTGCCAGC CCCTCCCAGC
  GTAAGGTCCC GACAGAAGCT GACTAGAGAC AACTGCTACA ACTAGACTAC ACACGTCATG
  Y
  ATTTAAATCT GAAAAAGCTT ACATTAACAC GACAGCCAAA CCCAGTGAGT CACAAGGTTC
  CACTTCCTCC TCACCTTAAC ACACAACAGC CCAGGGCAGC AGCCTGACAG CCCTGCCACC
  TTCATTCCTC AGGAGTCTCA GGGGCTGTAA GGCATTTGGG AACATGAACT TGTGGTAGAG
  AGTCAAGGTC CAGGGTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52346818	NES15375483	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47309086					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52346818	NES15375483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28777183 () rs orientation: forward

Symbol	Name	Function Class
Rr269361	regulatory region 269361	521 bp distal
Rr269362	regulatory region 269362	within coordinates
Trappc12	trafficking protein particle complex 12	within coordinates