rs47309427 SNP Detail

Summary

• ID
  rs47309427
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40083875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGACAGA AAGACTGTAA
  TAGTCAGAGG ATCAGGGTAT CTACTGAGAG ATGGTGTCTT CTATGTATGC CTGGGATCTG
  CACTAATGAA ATGCCAACAA TGTGATCAAT GAGAAAAGAC TTGAAAATGA TAATACTGAT
  TGCCATTTCA GTATAGATGG AATAAATCTC ACAAGGCCCT ACCCCCTGGA TCAAGAGCTA
  A
  ATATAGGCTG TTAATGGTTT CTGGTAAAGA ATCAATCATT TACAGGGATG GGCTTCCTGA
  CGTGTTATCC AGTATTAAGA GGTCAGACCT AATAAATGCA CATACAGTCA AGCAACATAT
  AATAAACCCA GAGACTGTTT ACAAATTGAT ATATATGTAT ATGATGATTT TTGAGAAAAA
  TAGAGGGATA GTGGAGGAGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144620767	ENSMUSSNP6406818	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47309427					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40083875 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	1577 bp upstream
Tssr81027	transcription start site region 81027	1479 bp upstream
Tssr81028	transcription start site region 81028	1425 bp upstream
Tssr81029	transcription start site region 81029	1301 bp upstream
Tssr81030	transcription start site region 81030	1184 bp upstream
Tssr81031	transcription start site region 81031	488 bp upstream
Tssr81032	transcription start site region 81032	363 bp downstream
Tssr81033	transcription start site region 81033	473 bp downstream
Tssr81034	transcription start site region 81034	498 bp downstream