rs47311892 SNP Detail

Summary

• ID
  rs47311892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:16239106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACAATTA CACTTCCTGC
  TTTTTTTTTT CTTCCCCGTT CCCCAGTAAC TAAGTACTAC TTAAAAAATA AGATCTGTAA
  TAGCCCTTTA GGTGAAGATT TATTGTTTCT ATTGATGCTT TCAATGGTTT TCCTGGGATT
  TTATGTGCCA AGGCTGGTTA ATTAGAAATA ATAGTGCTCT GTCCAGAATA ACTTTCTTCA
  Y
  GCCACACTAC ATTTTATATA AGAGTTTATA TATGCCAGAT ACATTGTAGT GTGTTAGTTA
  ACAAACTATT TTAATTAATG TTTTATTTCA GCATATGAAC ATCTAGGAAT TTTTAATTCA
  TAGAATTCCA GTTTATTTTA GTTACAATTG TAAACTTCAG AATTAGAGGT TAGTTTAAAA
  TTAGTTATTA AACATTTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss134642382	ENSMUSSNP5086947	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47311892					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16239106 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12993	CpG island 12993			1019 bp distal
Gm64384	predicted gene, 64384			1224 bp upstream
Rr397612	regulatory region 397612			1657 bp downstream
Rr573790	regulatory region 573790			1696 bp distal
Rr573791	regulatory region 573791			1235 bp distal
Rr573792	regulatory region 573792			734 bp distal
Tssr833	transcription start site region 833			1324 bp upstream
Tssr28473	transcription start site region 28473			1736 bp downstream
Tssr28474	transcription start site region 28474			1662 bp downstream
Tssr28475	transcription start site region 28475			1634 bp downstream
Tssr28476	transcription start site region 28476			1065 bp downstream
Tssr32661	transcription start site region 32661			1255 bp upstream
Tssr32662	transcription start site region 32662			1098 bp upstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3			Intron
				Noncoding-Transcript-Variant