rs47313275 SNP Detail

Summary

• ID
  rs47313275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25609554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGATGGAT CTTTGAGTTC
  CAGGCCAGTC TGGTCTTCAG AGCAAGTTCC AGGACAGCCA GGGCTACACA GAGAAACCCT
  GACTCAGGAA AAGAGGAAAA CCCTGGGGGG AGGGGAGAAG AAAAAAGCTT TTACTTTTTC
  TTTTTCTTTT TTTTTTTTTT CAAATAAGCA GACATTTGAT GGATTGCGAA CATTTATTCA
  R
  TCATCAAATA AAGACCCTCT TGGTGATGAG ATCATACAAG CAGGCAAATG AATGAAAGAG
  GCAGGAGGGA CATTCTTGTT GTTTAGCAGA TCATGTTTCT CAGGGTCACT GTTCAGAATA
  GCCCTAATGC TCGCCGTCTG ACTTGCTTCT GCTGTGGCCA CCCAGCAGAT AACCTAGGGT
  GCCAGTTCTG TGGTGTGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60584247	NES16331449	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47313275					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60584247	NES16331449	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25609554 () rs orientation: forward

Symbol	Name	Function Class
Gm63710	predicted gene, 63710	946 bp upstream
Rr400801	regulatory region 400801	1284 bp downstream
Rr400802	regulatory region 400802	126 bp downstream
Rr400803	regulatory region 400803	within coordinates
Tssr76672	transcription start site region 76672	1256 bp downstream
Tssr80688	transcription start site region 80688	443 bp upstream