rs47313463 SNP Detail

Summary

• ID
  rs47313463
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153004158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCCTAA AGTGCTTTTA TCCGATTGGT TCTTAAACCC
  CACTGTGCAC GGGGATCTTG GGTTGTTGGT GGGGAGGCAT GTTTAAATAG TTTCCTGAGC
  M
  TCACTCCCAA AGATTGCAAT ACCTTAGGCC ATGCTCAGGA ATCTATAGTC TCACAAACAG
  TCCTGTGTTT ATAATGGAGG TGGTCCCTGG GTTACCGTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147986885	ENSMUSSNP3764604	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47313463					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153004158 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75427	predicted gene, 75427			113 bp upstream
Gm75432	predicted gene, 75432			729 bp upstream
Rr397404	regulatory region 397404			797 bp downstream
Rr567570	regulatory region 567570			925 bp distal
Rr567571	regulatory region 567571			740 bp distal
Rr567572	regulatory region 567572			239 bp distal
Rr567573	regulatory region 567573			3 bp distal
Tm9sf4	transmembrane 9 superfamily member 4			Intron
				Noncoding-Transcript-Variant
Tssr20873	transcription start site region 20873			931 bp downstream
Tssr20874	transcription start site region 20874			899 bp downstream
Tssr20875	transcription start site region 20875			685 bp downstream
Tssr20876	transcription start site region 20876			282 bp downstream
Tssr20877	transcription start site region 20877			262 bp downstream
Tssr26883	transcription start site region 26883			767 bp upstream