rs47313463 SNP Detail

Summary

• ID
  rs47313463
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153004158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCCTAA AGTGCTTTTA TCCGATTGGT TCTTAAACCC
  CACTGTGCAC GGGGATCTTG GGTTGTTGGT GGGGAGGCAT GTTTAAATAG TTTCCTGAGC
  M
  TCACTCCCAA AGATTGCAAT ACCTTAGGCC ATGCTCAGGA ATCTATAGTC TCACAAACAG
  TCCTGTGTTT ATAATGGAGG TGGTCCCTGG GTTACCGTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147986885	ENSMUSSNP3764604	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47313463					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153004158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	172 bp distal
Gm75427	predicted gene, 75427	113 bp upstream
Gm75432	predicted gene, 75432	729 bp upstream
Rr39415	regulatory region 39415	1643 bp proximal
Rr55859	regulatory region 55859	within coordinates
Rr397404	regulatory region 397404	797 bp downstream
Tm9sf4	transmembrane 9 superfamily member 4	within coordinates
Tssr20873	transcription start site region 20873	931 bp downstream
Tssr20874	transcription start site region 20874	899 bp downstream
Tssr20875	transcription start site region 20875	685 bp downstream
Tssr20876	transcription start site region 20876	282 bp downstream
Tssr20877	transcription start site region 20877	262 bp downstream
Tssr26883	transcription start site region 26883	767 bp upstream