rs47314342 SNP Detail

Summary

• ID
  rs47314342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64606671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGATGAA GACTCTGCCA
  GCTGGGGGCC CGGATGAGGT TGTTGTTAAC AGAGGTTGTG CTGATGTTGC TGCTGGACAG
  TGGTGCTGCT GGAGTTGGCT GGCTTCTTAC GGGGGAATAT ATCAGCAGCC ATCTTCTTTT
  TAGTCTTCAA GATAATTATT TCATAACAAA TTGGGGGCAA CTTGCTGCTC CCACTGCCAC
  Y
  GCTGCTGCCG CCACCGCCGC CACCGCTGCT GTTGGCTTTC TATGAACCAT TTTTGGACCT
  GTTCTTACTG TTTCGTCAGC CTTCTGCGTG GCCACGGATG CTACCGCCGT TCGCAGCTCC
  GACCAGGTGC CCGCTCCGCA GGCCCCGTCC GGGAACTCAG GGATCCAAAG CCCGGCGGGC
  GATGGGCACT CGCCATAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149175727	ENSMUSSNP6892061	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47314342					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64606671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5782	CpG island 5782	985 bp distal
Cpgi5783	CpG island 5783	within coordinates
Gm7712	predicted gene 7712	69 bp upstream
Gm31218	predicted gene, 31218	within coordinates
Gm59386	predicted gene, 59386	1429 bp upstream
Rr481886	regulatory region 481886	1440 bp distal
Rr481887	regulatory region 481887	939 bp distal
Rr481888	regulatory region 481888	32 bp distal