rs47317850 SNP Detail

Summary

• ID
  rs47317850
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171043561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG AGTTAGAGTT GCTAGATCCA
  A
  TGACATCTAG CCTCAGAGCC TTTGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146157113	ENSMUSSNP3059975	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320117258	CHEV_1_173146123	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47317850					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171043561 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423243	regulatory region 423243	1961 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	18 bp downstream
Tssr9983	transcription start site region 9983	1985 bp downstream
Tssr9984	transcription start site region 9984	1947 bp downstream