rs47319076 SNP Detail

Summary

• ID
  rs47319076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGCATAG TGACATAGTT GATCAACGTA ACTGACATTT
  TAAAGTCTGT GACCCCTGAC TCCCAAATGT ATCTGTGAAG AAGAGCTGGT GACTAACAGT
  R
  AACAGGTTGT GTGTCACATC ATGTGACGGG TAATCGAGAA GAAACGGGGT GCTTGCTCTC
  CAGGTCAGGA GGGCCTACAT CCACACTGGC CAAGCGCACA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61262550	NES16880312	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47319076					SNP	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262550	NES16880312	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791793 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Intron
Tssr92746	transcription start site region 92746	258 bp downstream
Tssr92747	transcription start site region 92747	168 bp downstream
Tssr97085	transcription start site region 97085	402 bp upstream
Tssr97086	transcription start site region 97086	340 bp upstream
Tssr97087	transcription start site region 97087	314 bp upstream
Tssr97088	transcription start site region 97088	254 bp upstream
Tssr97089	transcription start site region 97089	239 bp upstream
Tssr97090	transcription start site region 97090	208 bp upstream
Tssr97091	transcription start site region 97091	176 bp downstream
Tssr97092	transcription start site region 97092	196 bp downstream
Tssr97093	transcription start site region 97093	220 bp downstream
Tssr97094	transcription start site region 97094	236 bp downstream
Tssr97095	transcription start site region 97095	250 bp downstream
Tssr97096	transcription start site region 97096	515 bp downstream
Tssr97097	transcription start site region 97097	789 bp downstream
Tssr97098	transcription start site region 97098	937 bp downstream