rs47320522 SNP Detail

Summary

• ID
  rs47320522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26197482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCACTGAG AGAATAGAAT
  GGGAATCCAG CAGCAGCCCT AGAGAGGACT AGTTGTTCTC TGTCTTGGCC AGCCCTCTAC
  AAAAGCAATT ATTCCACCCA AGCAACTTGG CCAAGGACAC GGGAACCAGG TCTTCTCTGA
  GTGAAGGAGG CTGGTCCCTC TCAGGTCTCC CCCATCTAGC CCAGAGTACA CCAGCATAAT
  Y
  AGCATGTGGT GAAGCAGGGA CACCAAGGAA TGCCAACACA GGTGGATCCA GTCTTTGTTC
  ACATTCTGGT TGCATAGGCT GTACTCCAGC ACGGCCCCCC ACCCTGGGTG TTAGGCTTGA
  GTTACCTCAA GTGCTGTCCT CGCTTTGCCG CTACTCTAGA GAATACTCCA CTTGCTCATT
  CTTTTACTCC TCTGTGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60255360	NES15700111	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47320522					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255360	NES15700111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26197482 () rs orientation: forward

Symbol	Name	Function Class
Capn15	calpain 15	within coordinates
Rr329923	regulatory region 329923	1082 bp distal
Rr329924	regulatory region 329924	119 bp proximal
Rr334464	regulatory region 334464	682 bp distal
Tssr146884	transcription start site region 146884	1379 bp downstream
Tssr146885	transcription start site region 146885	1428 bp downstream