rs47324158 SNP Detail

Summary

• ID
  rs47324158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114293089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCAGGCT GCAAGTAGGA
  GTGTCTTTGC AGAAATACCA TGGCCTGCGA TACCCTTGTC CCCATAGGCA GGGGTGTGGT
  TCAGCCATCC CCAGGGGCAG TGTTTACCCT AGTGGTTAAA GTTGGCTACG TGCTACCCTT
  TTGGCAGCCA GGGAGCCCTT GGCCACCCAC TCTCTATTCT GATACTATCA CCTCTTTTTC
  Y
  ATTGTGTCCA GTATGGCCCA TCCCAAGAAA ATGCTGCACC ATGCGTTCTC CTCTAGACAG
  GTGCTCAAGG GCAGAGGACA GGGACAATCT TGTAATGTCG CTCACCTAGA GGCCACCTGC
  ACCCATTGGT GGGAACATTT TGAACAGATT CCAGAGAAGC CGGCTTAGGC AAGGAGAACG
  GTTGCATGAG TGTGAAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60825951	NES16029820	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47324158					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60825951	NES16029820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114293089 () rs orientation: forward

Symbol	Name	Function Class
Acacb	acetyl-Coenzyme A carboxylase beta	within coordinates
Rr108154	regulatory region 108154	within coordinates
Rr120008	regulatory region 120008	1845 bp proximal
Tssr48071	transcription start site region 48071	398 bp upstream
Tssr48072	transcription start site region 48072	425 bp upstream
Tssr48073	transcription start site region 48073	443 bp upstream