rs47325845 SNP Detail

Summary

• ID
  rs47325845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38602845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGGAGT AATTTTGCAG
  AGGTGAAAAA TGGAAATCTA TGCAATAGTG ACAAAGCAGA TTTCTTGGAA AATGCACCAG
  GAGACAGAGT GCCCATGTGA GCTTTATAGT TAAATTAGCA TGGCTGGGGG ACTTTTCTCA
  GAAATATTTA GCCCTTAGGG GAGGAGTGGG CCAAAACTGT ATTAACTTCA TAGAGACTGT
  R
  TAGGAAAGAA GAAAGCAGAT TCACAATGGA ACAAAGGAGC CAACAGAGAG CGAAGATTAT
  AAGAGGAAGC AGGAAAGGGT GTTGGGAAAT GAAAACATGG ATAATTGATT AGAGGTCCCA
  ATGGGACAAA AGAATGATGT GAGGATGTTA GAGCCAATGT CAGAAATGTC AGAAAGTGGG
  TGGCACAGTT ACTAGTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60446808	NES16430277	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47325845					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446808	NES16430277	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38602845 () rs orientation: forward

Symbol	Name	Function Class
Rr515900	regulatory region 515900	698 bp distal
Tssr138414	transcription start site region 138414	1735 bp upstream
Tssr141113	transcription start site region 141113	1303 bp upstream
Tssr141114	transcription start site region 141114	1030 bp downstream
Tssr141115	transcription start site region 141115	1119 bp downstream
Tssr141116	transcription start site region 141116	1237 bp downstream
Tssr141117	transcription start site region 141117	1377 bp downstream
Tssr141118	transcription start site region 141118	1779 bp downstream
Upk1b	uroplakin 1B	within coordinates