rs47328040 SNP Detail

Summary

• ID
  rs47328040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGTGAA GGAAAAACAC
  AGGAGATCTT AAATATCAGA AATAGCAGCC TTAACATAGC AAACAACTTA CATATTTGTT
  ATTTAACTAT CATTTTGGGA GATGGAAATT ATAATCTCCA TTTTATCAAT GAGAAAACCC
  ATTTGCCTAC ATCATCAGAT GGTGGGACAT TACTGGATTT TTATGCTGTT ATGCAGATCT
  R
  TAGATTTAAA CTCATAAAGG GGCATCATGG TGAGTACTGC TGGCCTGGCA TATGTGCTGC
  CTCTGTTCTT CTACCTTACA CCAATATTAC TTTTACTGCT CTGCCAGAGT TTGTTTTCCT
  GAGGCATCCT TCATGTACAG TAAGCCACAT CTTAGGTTTT AGGGCAGTCA AGCCCCTAAA
  TTCATAGCTG CTGCTTGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936893	NES16189334	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47328040					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936893	NES16189334	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260853 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	1114 bp downstream
Tssr58809	transcription start site region 58809	477 bp downstream
Tssr58810	transcription start site region 58810	452 bp downstream
Tssr58811	transcription start site region 58811	363 bp downstream
Tssr63020	transcription start site region 63020	1390 bp upstream
Tssr63021	transcription start site region 63021	1312 bp upstream
Tssr63022	transcription start site region 63022	1273 bp upstream
Tssr63023	transcription start site region 63023	1218 bp upstream
Tssr63024	transcription start site region 63024	1120 bp upstream
Tssr63025	transcription start site region 63025	1088 bp upstream
Tssr63026	transcription start site region 63026	1067 bp upstream
Tssr63027	transcription start site region 63027	1029 bp upstream
Tssr63028	transcription start site region 63028	1004 bp upstream
Tssr63029	transcription start site region 63029	976 bp upstream
Tssr63030	transcription start site region 63030	920 bp upstream
Tssr63031	transcription start site region 63031	890 bp upstream
Tssr63032	transcription start site region 63032	859 bp upstream
Tssr63033	transcription start site region 63033	845 bp upstream
Tssr63034	transcription start site region 63034	819 bp upstream
Tssr63035	transcription start site region 63035	804 bp upstream
Tssr63036	transcription start site region 63036	737 bp upstream
Tssr63037	transcription start site region 63037	704 bp upstream
Tssr63038	transcription start site region 63038	679 bp upstream
Tssr63039	transcription start site region 63039	611 bp upstream
Tssr63040	transcription start site region 63040	567 bp upstream
Tssr63041	transcription start site region 63041	520 bp upstream
Tssr63042	transcription start site region 63042	500 bp upstream
Tssr63043	transcription start site region 63043	483 bp upstream
Tssr63044	transcription start site region 63044	448 bp upstream
Tssr63045	transcription start site region 63045	368 bp upstream
Tssr63046	transcription start site region 63046	355 bp upstream
Tssr63047	transcription start site region 63047	334 bp upstream
Tssr63048	transcription start site region 63048	300 bp upstream
Tssr63049	transcription start site region 63049	276 bp upstream
Tssr63050	transcription start site region 63050	231 bp upstream
Tssr63051	transcription start site region 63051	209 bp upstream
Tssr63052	transcription start site region 63052	1293 bp downstream
Tssr63053	transcription start site region 63053	1403 bp downstream
Tssr63054	transcription start site region 63054	1570 bp downstream
Tssr63055	transcription start site region 63055	1597 bp downstream
Tssr63056	transcription start site region 63056	1638 bp downstream
Tssr63057	transcription start site region 63057	1671 bp downstream