rs47328788 SNP Detail

Summary

• ID
  rs47328788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152494795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG CTGCGACCAC AGACCTGCAC
  Y
  ACCACATGCA GCCTGAATAG TTTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147970850	ENSMUSSNP1930352	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320562901	CHEV_2_152478611	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47328788					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152494795 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	8 bp downstream
D2Ertd691e	DNA segment, Chr 2, ERATO Doi 691, expressed	1759 bp distal
Rr374088	regulatory region 374088	within coordinates
Rr567410	regulatory region 567410	within coordinates
Rr567411	regulatory region 567411	1170 bp proximal
Rr567412	regulatory region 567412	1467 bp proximal
Tssr26849	transcription start site region 26849	1378 bp downstream
Tssr26850	transcription start site region 26850	1386 bp downstream
Tssr26851	transcription start site region 26851	1413 bp downstream
Tssr26852	transcription start site region 26852	1439 bp downstream