rs47329422 SNP Detail

Summary

• ID
  rs47329422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40760555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGGGCTCC GATCCCGCCG
  CTCCGCCCTT GTGCATCGGC GCCGGCGAAG GCTGCAGCCA GTCGCGGAGC CCTCGGCTCG
  CCCGGCGTGC CAGCGGTTCT GAAAAGCGAG CCCTGGCCGC GGGTCTTTGC GCCGCGGCTC
  TCTGCACGAC CATGGTAAAG CGAGTGCGGG CATCCCTTTA TATTCCAGTT TGGAAGAGAA
  R
  GCAGAGAGGG TGCTGGCTCT TTTGATGCCT GGAAATGGGG AGGTTCCTCG GGCAGAGTTA
  GGGAGACGCT TGCTGGGCTC TGATGTCGGC AGGACTCGCC CATTGTGCCA CCCAGATAAT
  TATTCAACTA TGCAGCATCC ATTGCACCTT TCCCATTTTT CTTTTCCCCT AGCTACAGCA
  TGCCCCCTAG CTTCCGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147070994	ENSMUSSNP2693545	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47329422					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40760555 () rs orientation: forward

Symbol	Name	Function Class
Cdc40	cell division cycle 40	1416 bp upstream
Cpgi1464	CpG island 1464	within coordinates
Rr401845	regulatory region 401845	1020 bp downstream
Rr430264	regulatory region 430264	722 bp distal
Rr430265	regulatory region 430265	782 bp distal
Rr430266	regulatory region 430266	within coordinates
Rr430267	regulatory region 430267	177 bp proximal
Tssr93031	transcription start site region 93031	1076 bp downstream
Tssr93032	transcription start site region 93032	1051 bp downstream
Tssr93033	transcription start site region 93033	961 bp downstream
Tssr93034	transcription start site region 93034	925 bp downstream
Tssr93035	transcription start site region 93035	697 bp downstream
Tssr97391	transcription start site region 97391	1429 bp upstream
Wasf1	WASP family, member 1	within coordinates