rs47330040 SNP Detail

Summary

• ID
  rs47330040
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATAAGAA GCTCATATGA
  GAGGGAGCTG TGTGCATGAA GGTGTGGGCA CATGTAAGAG GTTCTGGGAG TGTGAAAGAC
  CACCCAAACA CACAGTATCC CTCCATACCA GCTGCAGCGG GCGCTCAGCT GTGCCTGGGT
  GTGCTGTTGG CTGCTTGTGC CTAGGAAGGA ATGCAGGCTC TCTGTCGCTT GTTCCTCCCC
  K
  TTTGCCTCCT CTCCCTAAGC ATCTCTGAGT GACCATGCCT ATTTCTCTCT GCTTCCTAGT
  GTGTGTGGCT TGTGGGAGCC CTGGGCTCAT TTCCTGGTCT CTCTGCCGTA GTGTGCATTT
  CTAGAAATGG TTTAAAAATT CTCAGCGACT GGTAAGAGAG AGAAATCGAG TTTCTTTTTC
  TTTTTTCTTG CTAGCCCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874505	ENSMUSSNP4015557	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss320958003	CHEV_3_127600323	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47330040					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	882 bp distal
Fam241a	family with sequence similarity 241, member A	1082 bp upstream
Rr398009	regulatory region 398009	832 bp downstream
Rr584896	regulatory region 584896	1386 bp distal
Rr584897	regulatory region 584897	591 bp distal
Tssr35607	transcription start site region 35607	1892 bp upstream
Tssr35608	transcription start site region 35608	1172 bp upstream
Tssr35609	transcription start site region 35609	1135 bp upstream
Tssr35610	transcription start site region 35610	1068 bp upstream