rs47331386 SNP Detail

Summary

• ID
  rs47331386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34934044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGATGCT ACAGACCTCC
  ATTTTGGGAC TTTACTCAGC CTCGCCAAGC TGTTCTCAGT ATGCAGATTG TTGCTACCCA
  CTGCGCGGAT TCCGGGAGGA AAAATCAGCA TGCTTTGCAG TGCTCAGCGA AGCCAAGAGC
  AATGCTCAGC GAAGCCAAGA GGCTGTGGAG ACTTGTCACC CCTGTGGAAG CACTCAGGGG
  R
  CAGCGATTTG GCCGACCTCA AGGAGGCAAA GGCTAGCAGG GAACACAACG TCTTCCGCTA
  AAATGTCTTC CGCGCTGACA GAGGAACGGT TCTGTGAGAG GGCTCGCAAA ACAAAAAGGG
  TCGTGCAAAA AAGAAGAAAA GGTAGCACTC AGGCACCGCT GGGATTCGAA CCCAGGATCT
  CCTGTTTACT AGACAGGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60993597	NES16129811	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47331386					SNP	A	G	A	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993597	NES16129811	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34934044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	within coordinates
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	730 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	151 bp downstream
Rr645337	regulatory region 645337	1234 bp distal
Rr645338	regulatory region 645338	within coordinates
Rr645339	regulatory region 645339	12 bp proximal
Rr645340	regulatory region 645340	74 bp proximal
Rr645341	regulatory region 645341	741 bp proximal