rs47332185 SNP Detail

Summary

• ID
  rs47332185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130971398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTGAACC TCGATGTAAA
  CTTGAACATC GTGTAGGGAA ATATAGTGTA TGTTCATGGT ACAAGCATTT GACGGGGTGT
  GTCCAGTTAC ACAAGTGCAT ACAGAGGGCA GAGGGAAGCC ATTCCTGTCG GTTGCCTTGA
  GATGGGGTTT CACCCGGGTT TTCACAGCTC TCTGGGTACA CCTGTCTCCA ACCTGAAATG
  Y
  TGGGTTACAG GCACAAGCAG CTTTGCTATT CACACCTTCT GACATGGTAC ATGGTAGAAG
  AAGAAAATAG TAGGGATAAA TAAATTCATA TTACATTGTA TACCTGTGTG GAATTCTCAA
  GAATAAAGGA TTTGTTAAGA ATTAGTTGAA TGTGTTATAT ATATATAATA TTTCATATTA
  AATATATTAT ATATATATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61067236	NES16057271	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47332185					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61067236	NES16057271	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130971398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19815	CpG island 19815	1255 bp proximal
Gm73326	predicted gene, 73326	327 bp downstream
Pstk	phosphoseryl-tRNA kinase	1445 bp upstream
Rr400669	regulatory region 400669	1299 bp upstream
Rr656446	regulatory region 656446	1036 bp proximal
Rr656447	regulatory region 656447	1421 bp proximal
Tssr69565	transcription start site region 69565	1469 bp upstream
Tssr69566	transcription start site region 69566	1526 bp upstream